I'm on the proverbial fence about the utility of such a patch.
The exploits listed here rarely, if ever, happen by accident. The only one I knew about before becoming a FFIV hacker was weapon duping, about which I think I heard from a friend at school who read it in a cheatcode book sometime before the widespread availability of the worldwide web.
The point being, "honest" players, for lack of a better term, are unlikely to ever experience these bugs/glitches/whatever at all, and speedrunners are unlikely to have any interest in a patch that fixes them. So while I might be able to create a fix for some of these, the bigger question might be, "who is the audience?"